This is a simple script to convert PDB files (which contain information about protein structure) into FASTA format, which is just a list of the amino acids. This code handles one PDB file at a time, to do multiple ones put it in a loop e.g. for bash:
for i in `ls *.pdb`; do python pdb2fasta.py $i > $i.fasta; done
In operation, it just looks for lines with 'ATOM', then looks at the residue number to see if has changed. When the residue numbers change it outputs the current amino acid label. Feel free to use/modify this code for any purpose.
Excellent admin, I have learned to convert PDB files to FASTA format with python. Share more like this.
ReplyDeletePython Training Institute in Chennai | Best Python Training in Chennai
Great Article
DeleteB.Tech Final Year Projects for CSE in Python
FInal Year Project Centers in Chennai
JavaScript Training in Chennai
JavaScript Training in Chennai
Your blog is nice. I believe this will surely help the readers who are really in need of this vital piece of information. Thanks for sharing and kindly keep updating.
ReplyDeleteIELTS Coaching in Adyar
IELTS Class in Thiruvanmiyur
IELTS Class in Triplicane
IELTS Coaching in Anna Nagar
IELTS Coaching Centre in Koyambedu
IELTS Coaching Centres in Chennai Mogappair
IELTS Classes near me
Your post is really awesome. Your blog is really helpful for me to develop my skills in a right way. Thanks for sharing this unique information with us.
ReplyDelete- Learn Digital Academy
Good Blogs!!!Thanks for sharing with us....
ReplyDeletepython training in chennai | python training in anna nagar | python training in omr | python training in porur | python training in tambaram | python training in velachery
Thank you for sharing this valuable information with us.
ReplyDeleteThirukkural pdf download
Sai Satcharitra in malayalam pdf
Sai Satcharitra in marathi pdf
Sai Satcharitra in kannada pdf
Sai Satcharitra in bengali pdf
Sai Satcharitra in gujarati pdf
GlassWire Crack is a new application or service accessing the Internet for the first time? GlassWire Elite Crack politely alerts GlassWire Crack
ReplyDeleteMega Downloader crack offers user measured scrambled cloud stowing planetary and dialogue as of side to adjacent regular network browsers. Mega Downloader Pc
ReplyDeleteLearn the rules, grasp your technique, and the sport itself, as you might not need to lose some huge cash} whereas still uncertain of means to|tips on how to} play. If you don’t have reserves to wager, then you would possibly as properly not play right now. Before you hit the on line casino flooring, observe how a lot you intend to spend. And whereas at the on line casino, observe your wins and losses guarantee you|to make sure you} keep on target. 토토사이트 Equally essential, the payout share mathematically determines how a lot you would possibly lose.
ReplyDelete